Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865727:139865784:[+] chr1:63299410:63299481:[+] nonBSJ supported Intron

circRNA 5': GUUCUUC--CAGAAAAAU----CUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAA---------AGAAAUCCA 3'


            |:|| | || ||| ||| || || |||||:| ||| |:|| |||


target  3':ACGAGUUGUUGUAAUUUGUUGAUGAUGUAUCUC-UCUAUUAGUUAAAAU-GGUGGCAUUCCGUUAUUUUAAGGA 5'

 -14.70 2 KARR-seq
chrX:139865715:139865773:[+] chr1:63299406:63299471:[+] nonBSJ supported Intron

circRNA 5':CCAGUAAAU--CUAGUUCUUCCAGAAA-AAUCUAGAU--CUUCC---AGUCAAUCAGUGUCUU-CCAG 3'


            || ||||: ||| | ||| |||| |: || || |||| ||:| |||


target  3': GUAAUUUGUUGAUGAUGUAUCUCUCUAUUAGUUAAAAUGGUGGCAUUCCGUUAUUUUAAGGACGGU 5'

 -13.40 1 KARR-seq
chrX:139865715:139865775:[+] chr1:63299403:63299471:[+] nonBSJ supported Intron

circRNA 5':CCAGUAAAU--CUAGUUCUUCCAGAAA-AAUCUAGAU--CUUCC---AGUCAAUCAGUGUCUU-CCAGAA 3'


            || ||||: ||| | ||| |||| |: || || |||| ||:| |||:|


target  3': GUAAUUUGUUGAUGAUGUAUCUCUCUAUUAGUUAAAAUGGUGGCAUUCCGUUAUUUUAAGGACGGUUUC 5'

 -15.50 2 KARR-seq