Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865862:139865887:[+] chr1:44143601:44143627:[+] nonBSJ supported Intron

circRNA 5': GUCUUCCACCAAAUCCAGGUCUUC-CA 3'


            ||| |||||| | ||||||:|| |


target  3':AUAGU-GGUGGUGGAUGUCCAGGAGUGA 5'

 -27.40 2 KARR-seq
chrX:139866310:139866363:[+] chr1:44128673:44128714:[+] nonBSJ supported CDS

circRNA 5':AUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAA 3'


            ||||| |||| |||:|: |||| ||||||||| ||


target  3':CAGGUACAGAAGUCACAC--GGUUCGUU---UCCU------ACAGAAGGU-GUA 5'

 -31.50 1 KARR-seq
chrX:139866310:139866360:[+] chr1:44128676:44128714:[+] nonBSJ supported CDS

circRNA 5':AUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAG 3'


            ||||| |||| |||:|: |||| |||||||||


target  3':CAGGUACAGAAGUCACAC--GGUUCGUU---UCCU------ACAGAAGGU 5'

 -31.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866310:139866360:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866310:139866363:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC