Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866288:139866318:[+] chr1:36384678:36384707:[+] nonBSJ supported CDS

circRNA 5': GAAAAUCCUUGUCUUCCCUCAAAUCCAUAGC 3'


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target  3':ACUUUGCC-AACAGUAGGGUUUCUU-GUAUCA 5'

 -19.20 1 KARR-seq
chrX:139866287:139866318:[+] chr1:36384678:36384707:[+] nonBSJ supported CDS

circRNA 5':AGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGC 3'


            |||| ||||| |||| |||||


target  3':ACUUUGCC-AACAGUAGGGUUUCUU-GUAUCA 5'

 -19.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866287:139866318:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866288:139866318:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC