Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866058:139866080:[+] chr1:1748901:1748923:[-] nonBSJ supported Intron

circRNA 5':UUUGGGUCUUCCUGAAAAUCUAC 3'


            |||:||| ||||


target  3':CGACUCAGUAUGUUAUUAAGAUA 5'

 -9.50 6 KARR-seq
chrX:139865552:139865609:[+] chr1:1718433:1718474:[-] nonBSJ supported 3UTR

circRNA 5':AGCAAUUACUGGUCUUCCACCAAAUCCAGAU-CUUCCAGGAAAAUCCACGUCUUCCAGG 3'


            || |:| |||| :|: | ||||:| |||||||||


target  3':ACGAGAGU-ACCA---------------UUGCGCAGGUUCAACCUUAC-CAGAAGGUCA 5'

 -26.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:1718433:1718474:[-] target - chr1:1718448-1718449 G>A PACA-CA ICGC