Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr3:47098600:47098628:[-] chr11:65190517:65190555:[+] nonBSJ supported Exon

circRNA 5':CCCCUUUC-----------UGCCCCUCCACCAGUACCAGU 3'


            ||||::| | |||||||||||| ||||


target  3':CGGGAGGGUCUCCAGUUCAAGGGGGAGGUGGUCC--GUCAU 5'

 -37.80 2 KARR-seq
chr3:47098600:47098629:[-] chr11:65191264:65191313:[+] nonBSJ supported Exon

circRNA 5':ACCCCUUUCU-GCC--------------------CCUCCACCAGUACCAGU 3'


            |||| ::|: ||| ||||||||| |||||:


target  3': GGGGUGGGGUCGGAGUCGCCCUUCCGGAGAGAAGGAGGUGGUAAUGGUUG 5'

 -36.40 2 KARR-seq
chr3:47079181:47079241:[-] chr11:65207850:65207892:[+] nonBSJ supported Exon

circRNA 5':GGGAAAGCCCA-GGAGAUGA-UGCCAGCCUUGAGCAUGAAGCUGAGAUGGACCUGGGAACUCC 3'


            || || ::|| || |||||||||:| |||||| |||


target  3':ACCG--CGUUAGUUUCGAACGAC-GUCGGAACUUGA---------------GGACCC--GAGU 5'

 -35.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:47079181:47079241:[-] circRNA - chr3:47079200-47079201 C>A PACA-CA ICGC