Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865794:139865850:[+] chrX:129055384:129055439:[+] nonBSJ supported CDS

circRNA 5':GUCAA--UCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCA 3'


            ||| |||| :|||| || || ||| |||| |||| |||:|||


target  3':GAGUGAAAGUCUUU-GAGGUACCCGG--AGUUCGAGACCGUCAACGAGUCCCAGGAGGA 5'

 -37.50 5 KARR-seq
chrX:139865806:139865850:[+] chrX:129055384:129055426:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCA 3'


            ||||| || || ||| |||| |||| |||:|||


target  3':UGAGGUACCCGG--AGUUCGAGACCGUCAACGAGUCCCAGGAGGA 5'

 -32.90 5 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:129055384:129055426:[+] target - chrX:129055402-129055403 T>G BTCA-JP ICGC
chrX:129055384:129055439:[+] target - chrX:129055402-129055403 T>G BTCA-JP ICGC