Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865854:139865910:[+]	chrX:53428237:53428291:[-]	nonBSJ supported	Intron	circRNA 5':AAAUCUACGUCUUCCACCAAAUCCAGG-UCUUCCAGUCAAUCCACAUCUUCCGGAAAA 3' \|\|\|\|: \|: \|\|\|\|\| :\|\|\| :\|\|\|\|\| \|\|\|\| \|\|: \|\|\| target 3':GUUAGGGGUUAAAGGUAA---GGGUAAUGGAAGGGAUGACACUUGUACGUGGUGUUUC 5'	-25.90	1	KARR-seq
chrX:139865491:139865526:[+]	chrX:53439020:53439059:[-]	nonBSJ supported	CDS	circRNA 5':UGUCU--UCCA-----AGAAGCUCCAAGUCUUCCAGUAAAUCA 3' \|:\|\| \|\|\|\| \|\| \|\|\|\| \|\| \|\|\|\|\|: \|\|\| target 3':UCGGAAGAGGUGACUGUCGUAGAGGA--AG-AGGUCGAGUAGG 5'	-25.30	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865854:139865910:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC