Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866093:139866145:[+] chr9:33002698:33002745:[-] nonBSJ supported Intron

circRNA 5':AGCCAUGUC------UUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGA 3'


            ||| |:|| |||| ||| |||||| :|| | ||| |||


target  3':AUGG-AUAGUACUUCAAGGACUUAUUUC---AGAAGGAA--UGGUA---C-GAA-GUCG 5'

 -21.40 3 KARR-seq
chrX:139866095:139866145:[+] chr9:33002704:33002745:[-] nonBSJ supported Intron

circRNA 5':CCAUGUC-UUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGA 3'


            |||| |||| ||| |||||| :|| | ||| |||


target  3':AGUACUUCAAGGACUUAUUUC---AGAAGGAA--UGGUA---C-GAA-GUCG 5'

 -20.70 1 KARR-seq