Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866160:139866208:[+] chr7:141450132:141450168:[+] nonBSJ supported CDS

circRNA 5':CAGAAA-AUCCUUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGGG 3'


            |||| |||||| ||||: |||| || ||


target  3':UUCUUAGUAGGAA-------------AGAUGAGGAAGAGAAAGCAGACCA 5'

 -18.10 1 KARR-seq
chrX:139866160:139866196:[+] chr7:141450144:141450168:[+] nonBSJ supported 3UTR

circRNA 5':CAGAAA-AUCCUUGUCUUCCCUUAAAUCUAUAGCUUCC 3'


            |||| |||||| ||||: ||||


target  3':UUCUUAGUAGGAA-------------AGAUGAGGAAGA 5'

 -15.90 3 KARR-seq