Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866608:139866661:[+] chr7:134618089:134618143:[+] nonBSJ supported CDS

circRNA 5':UCCUAUA--UCUCCAGGUCUUCCA-GCAUCUCCAGGGCUUC-CAGCA-UCUGCUCGUCU 3'


            ||| ||||||: ||:|| || |||||| | | :|| ||| ||:


target  3':UGGACUAAAAGAGGUUACGAGGGAGCGAAA-----CCGAAGAGGAGAAGGAGGAGGAGGA 5'

 -38.20 1 KARR-seq
chrX:139866608:139866661:[+] chr7:134618089:134618142:[+] nonBSJ supported CDS

circRNA 5':UCCUAUA--UCUCCAGGUCUUCCA-GCAUCUCCAGGGCUUC-CAGCA-UCUGCUCGUCU 3'


            ||| ||||||: ||:|| || |||||| | | :|| ||| ||:


target  3': GGACUAAAAGAGGUUACGAGGGAGCGAAA-----CCGAAGAGGAGAAGGAGGAGGAGGA 5'

 -37.60 4 KARR-seq