Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865901:139865953:[+] chr7:114600910:114600960:[+] nonBSJ supported Intron

circRNA 5': UUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUC-CUGAA--GAUCCAC 3'


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target  3':AGAGGUAGAUGAACGG--CAGAACUUCUU-----UACAGAAGUGUAUAAACUAGGUGA 5'

 -26.40 1 KARR-seq
chrX:139865917:139865953:[+] chr7:114600910:114600956:[+] nonBSJ supported Intron

circRNA 5':GGUCUUCCAGCCAAUAU------AUGUCUUC-CUGAA--GAUCCAC 3'


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target  3':GUAGAUGAACGGCAGAACUUCUUUACAGAAGUGUAUAAACUAGGUGA 5'

 -23.70 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865901:139865953:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC