Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865782:139865848:[+] chr7:100864982:100865030:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCU--UCCA-GUCAAUCAGU-GUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUC 3'


            ||||:|| |||| ||| ||| :||:||| ||: |||||: || |: ||:


target  3':CGUCCGGAAGAGGUACAG---GUCCUUAGGAGG-------------CCG--AGGUCG---AGCCGACGAG 5'

 -39.30 1 KARR-seq
chrX:139865782:139865848:[+] chr7:100864971:100865030:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCU--UCCA-GUCAAUCAGU-GUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUC 3'


            ||||:|| |||| ||| ||| :||:||| ||||| || || || ||:||:


target  3':CGUCCGGAAGAGGUACAG---GUCCUUAGGAGGCCG------AGGUCGAGCCGACGAG--AGGGACGGAGA 5'

 -44.60 1 KARR-seq