Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865937:139866005:[+] chr7:26236176:26236233:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUGAAGAUCCACGUCUUCC-AGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUC 3'


            |:|||| ||||| ||| |||| || ||||| | || ||||| |||


target  3': GGAGGAGA---AGGUG----AGGAUCUUG-AGACUU-GAAGGACGUAAAGA-ACAGAUCUGUUUCGGA 5'

 -30.60 4 KARR-seq
chrX:139866554:139866619:[+] chr7:26236439:26236515:[-] nonBSJ supported CDS

circRNA 5':UCCAGAAAAUAUAU-GUCUUCC-----AACUAAGCUAC-GUCUUCCAACAAAUCCAUGUCUUCCUA--------UAUCUCC 3'


            ||| | || :|| ||| || ||| ||||:| |:||: |||| | || |||| ||||||


target  3': GGUGUCCUA-GUACCAGUAGUUUUCAUUGUUUCGGUUUCGGAGAAAAGAA-AGGU-CUGACGGAUAGUCAUUAAUAGAGU 5'

 -28.90 3 KARR-seq
chrX:139866574:139866619:[+] chr7:26236463:26236515:[-] nonBSJ supported CDS

circRNA 5':CAACUAAGCUAC-GUCUUCCAACAAAUCCAUGUCUUCCUA--------UAUCUCC 3'


            ||| ||||:| |:||: |||| | || |||| ||||||


target  3':AUUGUUUCGGUUUCGGAGAAAAGAA-AGGU-CUGACGGAUAGUCAUUAAUAGAGU 5'

 -25.80 3 KARR-seq
chrX:139866754:139866794:[+] chr7:26232894:26232930:[-] nonBSJ supported CDS

circRNA 5': UCCAUGU--CUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACA 3'


            ||| ||: |: |||| || ||| :|| || |||


target  3':AAGG-ACGAUGGUGGUUUCAAAGG-----UGAGAAGUAACCUG 5'

 -19.90 1 KARR-seq
chrX:139865913:139865978:[+] chr7:26236177:26236244:[-] nonBSJ supported CDS

circRNA 5': UCCAGGUCUUCCAG-CCAAUAUA--UGU-CUUCCUGAAGAUCCACGUCUUC-CAGAAAAUCCAUGUCUUCC 3'


            ||| ||||||| || || ||||||| || |||| ||:| | ||||


target  3':GAGG---AGAAGGUGAGGAUCUUGAGACUUGAAGGACGUAAAGAA-CAGAUCUGUUUCGGAAAGAAUGAAGA 5'

 -30.80 4 KARR-seq
chrX:139866495:139866542:[+] chr7:26233266:26233308:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGAAAAUCCACGUCUUCCA--ACCAA-GCCAUGUCUUCCAGAA 3'


            |||:||| || | ||:|||| ||| || |:||||:||


target  3':AUAGGAGG------AGAAGGAGGAGGUAUUGGCCCCGAU---GGAGGUUUUA 5'

 -31.20 1 KARR-seq
chrX:139865656:139865698:[+] chr7:26236203:26236244:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGCUAAUCCAUGUCUUC-CAGAAAAA-UCUGUGUCUUCC 3'


            ||||| || || ||||| ||:| ||| ||||


target  3':UGAAGGACGUAAAGA-ACAGAUCUGUUUCGGAAAGAAU--GAAGA 5'

 -19.10 2 KARR-seq
chrX:139865599:139865680:[+] chr7:26232930:26232995:[-] nonBSJ supported CDS

circRNA 5': CGUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUU-CAAGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCAUGUCUUCCA 3'


            ||| :||| || || ||||||| |||::|| ||||| || |||||: ||||


target  3':GGCAUCAA--UCUUCCA--AC-GACCAAUAUUAAAGGUUUUAGUAACAUUA----------AAGGU-GA--AGGUAUUAAAGGA 5'

 -23.90 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:26232930:26232995:[-] target 1501742 chr7:26232942-26232943 G>A Inclusion_body_myopathy_with_early-onset_Paget_disease_with_or_without_frontotemporal_dementia_2 ClinVar
chr7:26232930:26232995:[-] target 65454 chr7:26232966-26232967 T>A Inclusion_body_myopathy_with_early-onset_Paget_disease_with_or_without_frontotemporal_dementia_2 ClinVar
chrX:139866554:139866619:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866574:139866619:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866754:139866794:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC