Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866510:139866530:[+] chr6:166249515:166249538:[-] nonBSJ supported Intron

circRNA 5':CCAC-GUCUUCCAACCAA--GCCA 3'


            ||| || :|| ||| |||


target  3':AGUGUCACGAGUUUGUAAAACGGG 5'

 -10.10 2 KARR-seq
chrX:139866523:139866536:[+] chr6:166249524:166249539:[-] nonBSJ supported Intron

circRNA 5':CCAAGCCA--UGUCUU 3'


            |||:| ||:|:


target  3':AGUUUGUAAAACGGGU 5'

 -7.80 2 KARR-seq
chrX:139865801:139865860:[+] chr6:166312367:166312448:[-] nonBSJ supported Intron

circRNA 5':AGUGUCUUCCAGAAAGAAA----UCCAGG----------------UCUUCCAG-UCAGUCAGUGUCUUC-CAGAAAA-AUCUA 3'


            |::| |||||||| |||||: ||::||| || || ||||| ||:|| ||||


target  3':ACGUA-AAGGUCUUCCAAGAAGGAGGUCUACAGACACACGUAGUAAGGGGGUAAAGAAACCCAGAGAAGAGUUUUCAGUAGAC 5'

 -38.80 2 KARR-seq