Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866579:139866593:[+] chr6:53100519:53100536:[-] nonBSJ supported Exon

circRNA 5':AAGCU---ACGUCUUCCA 3'


            |||: ||: ||:||


target  3':GUCGGAACUGUUGAGGGA 5'

 -11.70 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866579:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866579:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC