Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865882:139865923:[+]	chr5:167841423:167841471:[+]	nonBSJ supported	CDS	circRNA 5': CUUC--CAGUCAAUCCACAUCUUC-CGGAAAAA---AUCCA--GGUCUUC 3' \|\|:\| \|\|\|: \|\|\| :\|\|\|\| \|\| \|\|\| \|\|\|\|:: target 3':AGAGGAAGUCGUCGAGGA--GGAAGAGCAACUAUUCCUAGUCGGCCAGGGA 5'	-22.50	1	KARR-seq
chrX:139865761:139865772:[+]	chr5:167841451:167841465:[+]	nonBSJ supported	CDS	circRNA 5': CAGUG--UCUUCCA 3' \|\|\|: \|\|:\|\|\| target 3':AGUCGUCGAGGAGGA 5'	-12.30	1	KARR-seq
chrX:139865800:139865811:[+]	chr5:167841451:167841465:[+]	nonBSJ supported	CDS	circRNA 5': CAGUG--UCUUCCA 3' \|\|\|: \|\|:\|\|\| target 3':AGUCGUCGAGGAGGA 5'	-12.30	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865882:139865923:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC