Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865811:139865836:[+] chr5:140098559:140098589:[+] nonBSJ supported Exon

circRNA 5':AGAAAGAAAUCCA--GGUCUU---CCAGUCA 3'


            ||||| |:|| |||||: ||| :||


target  3':CCUUUCG-UGGGCGCCCAGAGCUUGGUGGGUC 5'

 -22.10 1 KARR-seq
chrX:139865811:139865844:[+] chr5:140098551:140098589:[+] nonBSJ supported Exon

circRNA 5':AGAAAGAAAUCCA--GGUCUU---CCAGUCAGUCA-GUGU 3'


            ||||| |:|| |||||: ||| :||| |||


target  3':CCUUUCG-UGGGCGCCCAGAGCUUGGUGGGUCUCUCCACC 5'

 -27.80 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:140098551:140098589:[+] target - chr5:140098579-140098580 G>A PACA-CA ICGC
chr5:140098559:140098589:[+] target - chr5:140098579-140098580 G>A PACA-CA ICGC