Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865633:139865696:[+] chr5:70806698:70806766:[+] nonBSJ supported 5UTR

circRNA 5': CAAGGU--CUUCCA-----UCAAAUACAG--AUC-UUCCA---GCUAA-UCCAUGUCUUCCAGAAAAAUCUGUGUCUU 3'


            |||: |:|||| |||| |||| ||| |||| :|| |||||| :|||||:


target  3':AGUUUAGACGGAGGUAAAGAAGUUGUUGUCGGUAGAAAGGACUAUGAAAGAGGUACUACCCU----------UACAGAG 5'

 -32.00 1 KARR-seq
chrX:139865632:139865696:[+] chr5:70806698:70806767:[+] nonBSJ supported 5UTR

circRNA 5': UCAAGGU--CUUCCA-----UCAAAUACAG--AUC-UUCCA---GCUAA-UCCAUGUCUUCCAGAAAAAUCUGUGUCUU 3'


            ||||: |:|||| |||| |||| ||| |||| :|| |||||| :|||||:


target  3':AAGUUUAGACGGAGGUAAAGAAGUUGUUGUCGGUAGAAAGGACUAUGAAAGAGGUACUACCCU----------UACAGAG 5'

 -33.60 1 KARR-seq
chrX:139865633:139865674:[+] chr5:70806710:70806766:[+] nonBSJ supported 5UTR

circRNA 5': CAAGGU--CUUCCA-----UCAAAUACAG--AUC-UUCCA---GCUAA-UCCAUGU 3'


            |||: |:|||| |||| |||| ||| |||| :|| ||||||


target  3':AGUUUAGACGGAGGUAAAGAAGUUGUUGUCGGUAGAAAGGACUAUGAAAGAGGUACU 5'

 -27.60 1 KARR-seq