Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865876:139865892:[+]	chr4:183133642:183133656:[+]	nonBSJ supported	Intron	circRNA 5':CCAGGUCUUCCAGUCAA 3' \|\|\| \|:\|\|\|\|:\|\|\| target 3':UGUC--GGAGGUUAGUG 5'	-15.60	3	KARR-seq
chrX:139865839:139865908:[+]	chr4:183133590:183133656:[+]	nonBSJ supported	Intron	circRNA 5': CAGUGUCUUCCAGAAAAAUCUAC-G-UCUUCCACCAAAUC-CAG-GUCUUCCAGU-CAAUCCACAUCUUC--CGGAA 3' \|\|\|: \|\|: \|\|\|\| \|\| \| :\|\|\| \|\|\| \|:\|:\| \|\|\| \|\|\| \|\|\|\| \|:\|\| target 3':UGUCGGAGG--------UUAG-UGACUGGAAAAUAAUAAUCAGUCUCGGGAC-UCAUGUUCUCUCU-GAAGUCGUCUC 5'	-22.90	3	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr4:183133590:183133656:[+]	target	-	chr4:183133604-183133605	C>G	LAML-KR	ICGC
chrX:139865839:139865908:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC