Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865819:139865845:[+] chr4:88987000:88987022:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAGUCAG-UGUC 3'


            ||||:||| ||| ||| ||:


target  3':GAGGUUCAG-----CAGAGAGUAGACGA 5'

 -18.40 6 KARR-seq
chrX:139866405:139866431:[+] chr4:88996608:88996632:[+] nonBSJ supported CDS

circRNA 5': UGUCU---UCCAGCCUACUUGUGUCUUCCA 3'


            |||| :||||||| || |||


target  3':GACAGUGCUGGGUCGGAA------AGUAGGA 5'

 -18.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:88987000:88987022:[+] target 3062310 chr4:88987020-88987021 GAGAA>G Polycystic_kidney_disease_2 ClinVar
chr4:88987000:88987022:[+] target 3382026 chr4:88987013-88987014 C>CG Polycystic_kidney_disease_2 ClinVar
chr4:88987000:88987022:[+] target 3591425 chr4:88987014-88987015 GAC>G Polycystic_kidney_disease_2 ClinVar
chr4:88996608:88996632:[+] target 3591443 chr4:88996608-88996609 A>G Polycystic_kidney_disease_2 ClinVar
chr4:88996608:88996632:[+] target - chr4:88996626-88996627 G>A PACA-CA ICGC