Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865729:139865775:[+] chr4:1701738:1701769:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAA 3'


            ||||| || |||: | |||||||:|


target  3': GAAGGACUACUACUAAA-AGAG------------AGAGAAGGUUU 5'

 -16.80 3 KARR-seq
chrX:139865711:139865738:[+] chr4:1701738:1701769:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGUAAA------UCUAGUUCUUCCAGAA 3'


            ||||| ||| :|||||||:|


target  3': GAAGGACUACUACUAAAAGAGAGAGAAGGUUU 5'

 -16.70 3 KARR-seq
chrX:139865730:139865775:[+] chr4:1701738:1701769:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAA 3'


           ||||| || |||: | |||||||:|


target  3':GAAGGACUACUACUAAA-AGAG------------AGAGAAGGUUU 5'

 -16.70 1 KARR-seq