Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865959:139865996:[+] chr3:139076701:139076726:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCC 3'


            ||| || :|| ||||:| ||:|||||


target  3':UGUC----AGU--UAGUAGGUUU------UAUAGAAGU 5'

 -15.80 3 KARR-seq
chrX:139865903:139865924:[+] chr3:139076701:139076726:[-] nonBSJ supported CDS

circRNA 5':CCGGA-AAAAAUCCAG---GUCUUCC 3'


            |:| || |||||: :|||||


target  3':UGUCAGUUAGUAGGUUUUAUAGAAGU 5'

 -13.00 3 KARR-seq