5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866331:139866385:[+] | chr3:108224637:108224686:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGUCUUC-------CAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAA-AGCC 3' |:|: ||| |||||| ||||||| || |||||| ||| target 3':AUUCGUAAGAGUGGUAGUCCUU----------AGGUCGUAAAGA---AGAAGGGACAUCUCGU 5' |
-27.90 | 1 | KARR-seq |
| chrX:139866304:139866365:[+] | chr3:108224644:108224689:[-] | nonBSJ supported | CDS |
circRNA 5':CCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCC------AGCAAAU 3' |||| |||| |||| ||||| | || |||||| |||||| target 3':AGAGU---GGUA---------------GUCCUU-AGGUCGUAAAGA---AGAAGGGACAUCUCGUUUU 5' |
-28.00 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139866304:139866365:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |