Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866702:139866732:[+] chr3:53893605:53893644:[-] nonBSJ supported Exon

circRNA 5':GCAUCUUCAUGU-CUUCCAACAAC--------UACCCAGU 3'


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target  3':AGUAGAUAUACACGAUACAUACAUUCGUCAACAUGGGUCU 5'

 -16.80 3 KARR-seq
chrX:139866682:139866729:[+] chr3:53893628:53893669:[-] nonBSJ supported Exon

circRNA 5':CAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACUACCC 3'


            |||| |||: :|||| ||| |||| |||


target  3':UUCGUCA--ACAU---GGGUCUUAUU-GUAAUUAAGGAAUUUCUUGGU 5'

 -17.20 1 KARR-seq