Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865709:139865759:[+] chr3:47008596:47008627:[-] nonBSJ supported Intron

circRNA 5':AGUCUUCCAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAA 3'


            ||||: ||||| |:|| | ||| ||||||


target  3':ACAGAG--------------AGAAGCGAA---UGGA-C-AGAUUGUCAGUA 5'

 -18.20 5 KARR-seq
chrX:139865709:139865754:[+] chr3:47008614:47008667:[-] nonBSJ supported Intron

circRNA 5':AGUCUUCCAGUAAAUCUAGUUCUU-------------CCAGAAAAAUCUAGAUCUUCCA 3'


            |||| |||| |||| ||| ||||| ||| | :|||||


target  3':ACAGAUUGUCAG-UAGAGACCGAAUUACACCGGUUUCGGUCUG---AGAAC-GGAAGGG 5'

 -25.90 4 KARR-seq
chrX:139865709:139865754:[+] chr3:47008614:47008663:[-] nonBSJ supported Intron

circRNA 5':AGUCUUCCAGUAAA-UCUAGUUCUUCCA-GAAAAAUCUAGA-UCUU-CCA 3'


            |||| |||| ||| |:| | ||| |:||| |||| ||


target  3':ACAGAUUGUCAGUAGAGACCGAAUUACACCGGUUUCGGUCUGAGAACGGA 5'

 -24.10 1 KARR-seq