Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866298:139866343:[+] chr22:37425690:37425741:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCCUCAAA-UCC-AUA-GCUUCCGAAAAAUCCA-GGUCUUCCAGG 3'


            |:||| |||| :|| |: || ||:| || || || |||| ||


target  3':GCGGAAAGGAGGGCGGGGAUGACCGUCGGUUGUUCAGUUGCCUUAAGGACCG 5'

 -29.80 1 KARR-seq
chrX:139866320:139866341:[+] chr22:37425740:37425759:[+] nonBSJ supported 3UTR

circRNA 5':UCCGAAAAAUCCAGGU----CUUCCA 3'


           ||| |||||| |:|||


target  3':AGG------AGGUCCCGAGCGGAGGC 5'

 -14.90 2 KARR-seq
chrX:139866297:139866343:[+] chr22:37425690:37425742:[+] nonBSJ supported 3UTR

circRNA 5': UGUCUUCCCUCAAA-UCC-AUA-GCUUCCGAAAAAUCCA-GGUCUUCCAGG 3'


            ||:||| |||| :|| |: || ||:| || || || |||| ||


target  3':GGCGGAAAGGAGGGCGGGGAUGACCGUCGGUUGUUCAGUUGCCUUAAGGACCG 5'

 -29.80 1 KARR-seq
chrX:139866298:139866316:[+] chr22:37425663:37425681:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCCUCAAAU-CCAUA 3'


            ||| ||:||||| |||:


target  3':ACAGU--GGGGUUUACGGUGG 5'

 -17.80 1 KARR-seq
chrX:139866316:139866343:[+] chr22:37425690:37425719:[+] nonBSJ supported 3UTR

circRNA 5':AGCUUCCGAAAAAUCCA-GGUCUUCCAGG 3'


            || ||:| || || || |||| ||


target  3':CCGUCGGUUGUUCAGUUGCCUUAAGGACCG 5'

 -15.60 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866297:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866297:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866298:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC