Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865968:139866025:[+] chr22:36688184:36688245:[-] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGAAAAUCCA--UGU--CUUCCAGUA-ACCUCC-CAGUC--UUCCAGAAAAUCCA 3'


            || |:|:||||| ||| || ||||| |||||| |||: |||||| |:||


target  3':AGUCCGGGAGGUCC---AGGAAGACCUCGAAGGAGAAGUGGAGGAGUCGUCAAAGGUCCG-UGGGG 5'

 -50.90 2 KARR-seq
chrX:139866767:139866825:[+] chr22:36685197:36685248:[-] nonBSJ supported CDS

circRNA 5':ACGUCUCCAGUGUGCUGAUCUUCUGACAUUCA-GGU--CUUCCAGUGUCUGCAAUAUCCAGG 3'


            || ||||||: |:| :|||||| | |:|| ||: |:||||| |:|:| ||||


target  3':GGC-GAGGUCGA--GGC-GGAAGAC-G-AGGUACCGAAGGAGGUCCCGGGCCC----GGUCG 5'

 -51.60 1 KARR-seq
chrX:139865335:139865381:[+] chr22:36689402:36689427:[-] nonBSJ supported CDS

circRNA 5': UCCAGGGUUUCCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCG 3'


            |||||| ||||: ||:||: ||||


target  3':GAGGUCCA--------------ACACGAA-CCGGAG-------GAGGA 5'

 -23.10 2 KARR-seq
chrX:139865581:139865641:[+] chr22:36684797:36684856:[-] nonBSJ supported CDS

circRNA 5':AUCUUC-CAGGAAAA-UCCACGUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCAAGGUCUU 3'


            ||:|| | ||| |:|:| |||| ||| || :|||| ||:||


target  3':GAGGAGCGAGACGAGCAGGGCCGGGACGUCC---AGGGCGAGCUUGACCCGGAAGUACCGGAC 5'

 -31.60 2 KARR-seq
chrX:139865558:139865590:[+] chr22:36684837:36684872:[-] nonBSJ supported CDS

circRNA 5':UACU-GGUCUUCCA--CCAAAUCCA-GAUCUUCCAGG 3'


            ||| ||:|||| || ||:| ||||:


target  3':UUGACCCGGAAGUACCGGACGUCCAACUGG-AGGUUG 5'

 -20.10 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr22:36684797:36684856:[-] target 1703780 chr22:36684831-36684832 C>T Macrothrombocytopenia_and_granulocyte_inclusions_with_or_without_nephritis_or_sensorineural_hearing_loss ClinVar
chr22:36688184:36688245:[-] target - chr22:36688185-36688186 C>T BTCA-JP ICGC
chrX:139866767:139866825:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC