Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865491:139865553:[+]	chr22:21998492:21998533:[+]	nonBSJ supported	3UTR	circRNA 5':UGUCUU--CCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUCCAG 3' \|\|\|\|: \|\|\|\|\|\| \|:\|:\| \|\|\| :\|\|\| :\|\| \|\|\| target 3':UCAGAGACGGUUCUCAC----------------------CGGGACGUCUGCGGGGU-GGACGGUG 5'	-25.60	3	KARR-seq
chrX:139865492:139865553:[+]	chr22:21998493:21998533:[+]	nonBSJ supported	3UTR	circRNA 5': GUCUU--CCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUCCAG 3' \|\|\|\|: \|\|\|\|\|\| \|:\|:\| \|\|\| :\|\|\| :\|\| \|\|\| target 3':UCAGAGACGGUUCUCAC----------------------CGGGACGUCUGCGGGGU-GGACGGU 5'	-25.60	2	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr22:21998492:21998533:[+]	target	-	chr22:21998523-21998524	T>G	LICA-CN	ICGC
chr22:21998493:21998533:[+]	target	-	chr22:21998523-21998524	T>G	LICA-CN	ICGC