Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866295:139866350:[+] chr20:30380554:30380606:[+] nonBSJ supported CDS

circRNA 5':CUUG-UCUUCCCUCAAAUCCAUA-GCUUCCGAAAAAUCCA-GGUCUUCCAGGAAAU-CCG 3'


            ||| ||||| ||| || ||| || ||| |||| ||


target  3':AGACAAGAAG-----UUACGUUUCCGACCACUGAACCCCUGCCACUAA--CCUUCAUGGA 5'

 -12.70 2 KARR-seq
chrX:139866244:139866273:[+] chr20:30380570:30380602:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAA-CAAAGCCA--UGUCUUCCAGACU 3'


            ||||| ||||| | || ||| |||


target  3':AAGAAGUUACGUUUCCGACCACUGAACCCCUGC 5'

 -12.80 1 KARR-seq
chrX:139866298:139866350:[+] chr20:30380554:30380602:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCCUCAAAUCCAUA-GCUUCCGAAAAAUCCA-GGUCUUCCAGGAAAU-CCG 3'


            ||||| ||| || ||| || ||| |||| ||


target  3':AAGAAG-----UUACGUUUCCGACCACUGAACCCCUGCCACUAA--CCUUCAUGGA 5'

 -11.40 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866295:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866298:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC