Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865699:139865712:[+] chr20:3786593:3786607:[+] nonBSJ supported 3UTR

circRNA 5':ACCAAAUCC-AAGUC 3'


            |||||:|| ||||


target  3':AGGUUUGGGAUUCAC 5'

 -14.00 1 KARR-seq
chrX:139865686:139865711:[+] chr20:3786595:3786633:[+] nonBSJ supported 3UTR

circRNA 5':AUCUGUGUC--UUCCA-----------CCAAAUCC-AAGU 3'


            |||||| | |||| |||||:|| |||


target  3':AAGACACUGUAAAGGAGAACUUAUCGAGGUUUGGGAUUC 5'

 -20.50 1 KARR-seq
chrX:139865686:139865712:[+] chr20:3786593:3786633:[+] nonBSJ supported 3UTR

circRNA 5':AUCUGUGUC--UUCCA-----------CCAAAUCC-AAGUC 3'


            |||||| | |||| |||||:|| ||||


target  3':AAGACACUGUAAAGGAGAACUUAUCGAGGUUUGGGAUUCAC 5'

 -22.20 5 KARR-seq
chrX:139865687:139865712:[+] chr20:3786593:3786631:[+] nonBSJ supported 3UTR

circRNA 5':UCUGUGUC--UUCCA-----------CCAAAUCC-AAGUC 3'


            ||||| | |||| |||||:|| ||||


target  3': GACACUGUAAAGGAGAACUUAUCGAGGUUUGGGAUUCAC 5'

 -19.60 1 KARR-seq