Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866432:139866456:[+] chr2:232325488:232325516:[-] nonBSJ supported CDS

circRNA 5':ACAAAGGUACG-UCUUCCAA--CAAAGG 3'


            | || :||| |||| || |||


target  3':GGAGUCGGUGCAAGAACCGAAAGUGUCCU 5'

 -10.80 3 KARR-seq
chrX:139866528:139866559:[+] chr2:232325235:232325258:[-] nonBSJ supported CDS

circRNA 5':CCAUG-UCUUCCAGAAAAUCCACGUCUUCCAGA 3'


            ||| :|||| ||| ||||||


target  3': GUAAAGGAAGAAA--------GCAAAAGGUCC 5'

 -12.80 2 KARR-seq
chrX:139866440:139866503:[+] chr2:232326394:232326455:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCA-ACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUU-CCA 3'


            |:||:||| || :| |:||:||| |||||||| ||:| |||| ||


target  3':AGUAGGAGGAGUGACAGUA-GUAGGAGGAGAAGUAGUGACAGAAGGAAGAA-CCGUA-AGAACGG 5'

 -43.80 2 KARR-seq
chrX:139865749:139865771:[+] chr2:232325251:232325265:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGUCAAUCAGUGUCUUCC 3'


            |||||| ||| ||||


target  3':AAAGGUC-------CAC-GAAGA 5'

 -12.90 1 KARR-seq
chrX:139865421:139865462:[+] chr2:232326448:232326493:[-] nonBSJ supported CDS

circRNA 5': UCUU-CCAGAUAA----UCCUGAGCUUCCAGAAAAUCCACAUCUUCC 3'


            |||| ||| :||| ||| ||| :||||


target  3':AAGAACGGUAAGAAACGGGGGAACCGACCCUACCGUC-GUG-GGAAGA 5'

 -18.30 1 KARR-seq
chrX:139866675:139866708:[+] chr2:232325249:232325278:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGCAUCUCUGUGUCUUC-----CAGCAUCUU 3'


            || |||||| ||| |||| ||| |||


target  3': CAAAAGGUC-------CAC-GAAGAAACUGUCCGAGAC 5'

 -15.60 2 KARR-seq
chrX:139865749:139865774:[+] chr2:232325251:232325273:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGUCAAUCAGUGUCUUC-----CAGA 3'


            |||||| ||| |||| |||


target  3':AAAGGUC-------CAC-GAAGAAACUGUCC 5'

 -13.60 1 KARR-seq
chrX:139866414:139866477:[+] chr2:232326256:232326319:[-] nonBSJ supported CDS

circRNA 5':GCCUACUUGU----GUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUAU 3'


            ||| |:|| ||| ||| |||| ||| || | || ||| |||:|


target  3':AGGAGUAGCAGUAGCAGUAGGAGUAGUAGAAGCAGUAGGAGUAG--CA-GGAGUAGGAGAC-UCCGUC 5'

 -31.40 1 KARR-seq
chrX:139866673:139866722:[+] chr2:232320267:232320313:[-] nonBSJ supported CDS

circRNA 5': CA-CGUCUUCCAGCAUCUCUGUGUCUUCCA-GCAUCUUCAU-GUCUUCCA-ACA 3'


            || ||||||||| || |:||:| ||| ||| :||:||| ||


target  3':AGUGGCAGAAGGU-------AC-CGGAGGAACCGUCGAAACCGUAGGAGGAGUGA 5'

 -34.80 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:232326394:232326455:[-] target - chr2:232326417-232326418 C>T LAML-KR ICGC