Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865898:139865923:[+]	chr2:71653877:71653901:[+]	nonBSJ supported	CDS	circRNA 5':AUCUUCCGGAAAAAAUCCAGGUCUUC 3' \|\|\|\|\|\|: \|\|\|\|\| target 3':AAGAAGGUAUAAAUCAAGA--AGAAGU 5'	-12.20	2	KARR-seq
chrX:139865820:139865871:[+]	chr2:71653859:71653906:[+]	nonBSJ supported	CDS	circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACC 3' \|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\| target 3':UGGUAAAGAAGGUAUAAA--UCA-AGAAGAAGUAGUUA-AUGAAGUAGGUGU 5'	-30.50	2	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865898:139865923:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC