Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865513:139865568:[+] chr2:54851948:54852022:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCAAGUCU-----------UCCAGCAAAUCCAG-UCU---------UCCAGCAAUUACUGGUCUUC 3'


            ||||||| || |||| ||| ||||| |||| ||| ||| || || |::|||||


target  3':CAAGGUCAAAGAGGACAGAAUACUCGAGUAAGG-CGUUUCGGUCAAGAGAAAGCACAAGG-CGAAAAAGGUCAGAAA 5'

 -41.70 2 KARR-seq
chrX:139865513:139865566:[+] chr2:54851951:54852022:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCAAGUCU-----------UCCAGCAAAUCCAG-UCU---------UCCAGCAAUUACUGGUCU 3'


            ||||||| || |||| ||| ||||| |||| ||| ||| || || |::|||


target  3':CAAGGUCAAAGAGGACAGAAUACUCGAGUAAGG-CGUUUCGGUCAAGAGAAAGCACAAGG-CGAAAAAGGUCAG 5'

 -39.70 2 KARR-seq
chrX:139865513:139865570:[+] chr2:54851963:54852022:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCAAGUCU-----------UCCAGCAAAUCCAG-UCUUCCAGCAAUUACUGGUCUUCCA 3'


            ||||||| || |||| ||| ||||| |||| |||: | || ||||


target  3':CAAGGUCAAAGAGGACAGAAUACUCGAGUAAGG-CGUUUCGGUCAAGAGAA---------AGCACAAGGC 5'

 -34.30 4 KARR-seq
chrX:139865662:139865694:[+] chr2:54872450:54872475:[+] nonBSJ supported CDS

circRNA 5':AGCUAAUCCAUGUCUUCCA-GAAAAAUCUGUGUC 3'


            ||| ||||| || | || |||:


target  3':GCGAACG---ACAGAUGGAGC-----AGCCACGA 5'

 -12.40 2 KARR-seq