Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865821:139865869:[+] chr2:24158487:24158534:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCUU-CCAGUCA-GU-C-AGUG-UCUUCCAGAAAAAUCUACGUCUUCCA 3'


            || ||:| ||||: || | |||| ||| |||||:||||||


target  3':UGUA-AGGAUGGUCGCUACAUGAUCACAAGAUUAAAG----AGAUGUAGAAGG 5'

 -33.60 2 KARR-seq
chrX:139865821:139865867:[+] chr2:24158489:24158534:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCUU-CCAGUCA-GU-C-AGUG-UCUUCCAGAAAAAUCUACGUCUUC 3'


            || ||:| ||||: || | |||| ||| |||||:||||


target  3':UGUA-AGGAUGGUCGCUACAUGAUCACAAGAUUAAAG----AGAUGUAGAA 5'

 -25.80 1 KARR-seq