Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865819:139865896:[+] chr2:10313712:10313773:[+] nonBSJ supported Intron

circRNA 5':AUCCA-GGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCA------CCAAAUCCAGGU----CUUCCAGUCAAUCCA 3'


            ||| | |||:| ||||| || || ||||||| ||:|||: |||


target  3': AGGAGCGAGAGGAAG-----------------------AGAUGACUCC-GUACUCCCGGCUAAGGUCCACUCCGAGGGUUCG--AGGC 5'

 -32.00 1 KARR-seq
chrX:139865869:139865896:[+] chr2:10313712:10313741:[+] nonBSJ supported Intron

circRNA 5':ACCAAAUCCAGGU----CUUCCAGUCAAUCCA 3'


            || ||||||| ||:|||: |||


target  3':CGGCUAAGGUCCACUCCGAGGGUUCG--AGGC 5'

 -23.40 1 KARR-seq