Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866577:139866629:[+] chr19:40330897:40330946:[-] nonBSJ supported CDS

circRNA 5':CUAAGCUACGUCUUCCAACAAAUCCAUG-UCUUCCUAUAUCUCCAG---GUCUUCCA 3'


            |||:|| || :||| ||| | |||| |||| :||||||


target  3':UAUUUGACUAAG-GGGUCCCU--GGUCCAAGAACCACU----GGUCACGUAGAAGGA 5'

 -25.20 3 KARR-seq
chrX:139866598:139866634:[+] chr19:40330894:40330942:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGU-CU---UCCUAUAUCUCCAGG-UCUU-----CCA--GCAUC 3'


            |||||: || |||: ||||| |||| ||| |||||


target  3': AGGUAUUUGACUAAGGGGUCCCUGGUCCAAGAACCACUGGUCACGUAGA 5'

 -28.50 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866577:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chr19:40330894:40330942:[-] target - chr19:40330915-40330916 G>C LICA-CN ICGC
chr19:40330897:40330946:[-] target - chr19:40330915-40330916 G>C LICA-CN ICGC
chrX:139866577:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC