Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866508:139866541:[+] chr19:36728679:36728717:[+] nonBSJ supported 3UTR

circRNA 5':AUCCACGUCUUCCAACCAAGCCAU----GUC---UUCCAGA 3'


            ||| |:| |||| ||||: :|| |||||:|


target  3':AAGGAGUA-AAGGACUA--CGGUGAACAUAGUAUAAGGUUUA 5'

 -19.90 5 KARR-seq
chrX:139866508:139866542:[+] chr19:36728679:36728717:[+] nonBSJ supported 3UTR

circRNA 5':AUCCACGUCUUCCAACCAAGCCAU----GUC---UUCCAGAA 3'


            ||| |:| |||| ||||: :|| |||||:|


target  3':AAGGAGUA-AAGGACUA--CGGUGAACAUAGUAUAAGGUUUA 5'

 -20.40 5 KARR-seq