5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866058:139866106:[+] | chr19:13054690:13054762:[+] | nonBSJ supported | Intron |
circRNA 5':UUUGGGUCUU--------CCUGAAAA--------UCUACG--UCUUCCAAAAAA--GCC----AUGUCUUCCA 3' |::||:||: |||| |||||: || ||| ||| |::|||||| target 3':GAGUCCGGAGUCAGGUCGGGACCUCCGUCCGGAGAGAUGUCGAGCAGGAACCGGACCGGCCCCUGUAGAAGGA 5' |
-32.90 | 3 | KARR-seq |
| chrX:139866654:139866720:[+] | chr19:13054542:13054596:[+] | nonBSJ supported | CDS |
circRNA 5':GCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCA-UGUCUUCCAA 3' || |||||| :|||| ||:| ||| |||||: ||:|| ||:| ||||:| || target 3':AGAACAGAAGAA---GGAGG---AGGAAUUCG--GAGACG-AGGAGC----AGGACAAACAGGAAGUA 5' |
-36.70 | 4 | KARR-seq |
| chrX:139866021:139866062:[+] | chr19:13051130:13051193:[+] | nonBSJ supported | CDS |
circRNA 5':AUCCAC-GUCU-----------------UCCCAA-CAA--UCCAAGUCUUCCGGAUA--AUUUGG 3' ||| :||| |||||| | |||||| |||||: |::||| target 3': AGGAAAUAGAAGAACCCACCGUCCUUCAGGGUUAGCAGAAGGUUCCUC-GGCCUGAGGUGGACCG 5' |
-29.30 | 1 | KARR-seq |
| chrX:139866651:139866720:[+] | chr19:13054542:13054597:[+] | nonBSJ supported | CDS |
circRNA 5': UCUGCUCGUCUUCCAACAUCUCCACGUCUUCC---AGCAUCUCUGUGUCUUCCAGCAUCUUCA-UGUCUUCCAA 3' ||| || |||||| ||:||| ||| |||||: ||:|| ||:| ||||:| || target 3':AAGAACAGAAGAAGG------------AGGAGGAAUUCG--GAGACG-AGGAGC----AGGACAAACAGGAAGUA 5' |
-37.20 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr19:13054542:13054596:[+] | target | - | chr19:13054586-13054587 | A>G | PRAD-CA | ICGC |
| chr19:13054542:13054597:[+] | target | - | chr19:13054586-13054587 | A>G | PRAD-CA | ICGC |