Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865474:139865500:[+] chr19:8551185:8551209:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCGGACAAUCCAUGUCUUCCAA 3'


            ||:||||:| |||:|: ||||


target  3':AAGGAGGCUUCAACGGUGCG--AGGUA 5'

 -24.20 1 KARR-seq
chrX:139865474:139865508:[+] chr19:8551181:8551209:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCC 3'


            ||:||||:| |||:|: |||| |||


target  3':AAGGAGGCUUCAACGGUGCG--AGGUA----GAGC 5'

 -24.40 2 KARR-seq