5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865528:139865555:[+] | chr18:71930639:71930680:[-] | nonBSJ supported | 5UTR |
circRNA 5': GUCU----UCCAGCAAA--UC-CAGU-------CUUCCAGCA 3' |:|: ||| |||| || |||| |:|||||| target 3':ACGGGCUGUAGGA-GUUUCAAGAGUCAUCGCAGUGGAGGUCGA 5' |
-23.50 | 6 | KARR-seq |
| chrX:139865518:139865561:[+] | chr18:71920842:71920886:[-] | nonBSJ supported | CDS |
circRNA 5':AGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUC-CAGCAAUUACU 3' ||| |||||| | | || ||| ||| ||:||: target 3':CUAUGUAGUUCCGCUGC-CGGUGACGUCUCUACCGUCCCUAGUGGG 5' |
-16.00 | 5 | KARR-seq |
| chrX:139865518:139865556:[+] | chr18:71920842:71920899:[-] | nonBSJ supported | CDS |
circRNA 5':AGUAAAUCAAGUCUU---CCA--GCAA--------------AUCCAGUCU-UCCAGCAA 3' ||| |||||| | ||| ||| |:||||| |||| || target 3':CUAUGUAGUUCCGCUGCCGGUGACGUCUCUACCGUCCCUAGUGGGUCAACCAGGUGGU 5' |
-21.50 | 1 | KARR-seq |