Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865353:139865408:[+] chr17:55183561:55183600:[+] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUU-CCAACAACUCC-GGGUCUUCCAGCGACUUCAAGUCUUCCA 3'


            ||||:: | ||:|:: ||| || ||| ||| ||||||


target  3': GGACGU-GA-CCGGGGUGGU------GGACCCUAC---UCGACG------AGAAGGG 5'

 -28.40 1 KARR-seq
chrX:139865339:139865372:[+] chr17:55183561:55183593:[+] nonBSJ supported CDS

circRNA 5':GGGUUUCCGAUGGCACCUG---UGUCAAGGUCUUCCA 3'


            ||:::| : |||||| || | ||||||


target  3':ACCGGGG----UGGUGGACCCUACUCGACGAGAAGGG 5'

 -25.30 1 KARR-seq