Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866246:139866284:[+] chr17:38569184:38569226:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGCCAUGUCUUCCAGA-----CUAUCCAUGUCUU 3'


            ||||| | :||| |||||| |:||||||||||


target  3':CAAGGUAGAG-UGGUCGAGAAGGGUAUAAUAGGUAGGUACAGAU 5'

 -36.70 2 KARR-seq
chrX:139866101:139866123:[+] chr17:38551742:38551762:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGAAAAUCCACAUCUUCC 3'


            |||| || ||||||:| ||


target  3':GGAAGAUCA---AGGUGUGGUAGA 5'

 -16.60 2 KARR-seq
chrX:139866121:139866139:[+] chr17:38548959:38548978:[-] nonBSJ supported CDS

circRNA 5':UCCAAUGGCCUCCAGGUCU 3'


            |||||| |||


target  3':CGGUUACAUCAAACAAAGAA 5'

 -8.20 2 KARR-seq
chrX:139866318:139866362:[+] chr17:38569165:38569200:[-] nonBSJ supported CDS

circRNA 5':CUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCA 3'


            ||||: ||| ||| || |||:| || |||||


target  3':AGAGGUAACU----UCCCGAA----CUCAAGGUAGAGU-GGUCGA 5'

 -23.70 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:38569165:38569200:[-] target - chr17:38569184-38569185 G>T LICA-CN ICGC