Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865826:139865888:[+]	chr17:35310392:35310446:[+]	nonBSJ supported	CDS	circRNA 5':UCUUCCA-GUCAGUCAG--UGUCUUCCAGAAAAAUCUACGUCUUCCACCAAA--UCC--AGGUCUUCCAG 3' \|\|\|\|\|\| \|:\|\| \|\| :\|\|\|\|\|\|\| \|\|:\|\|\| \|\| \|\|\| \|\|\|\|\| \|\|\|\| target 3': GAAGGUACGGUGAGAGAAGCAGAAGG-------------AGGAGGA-GUGACGAGGGUUCCAGUAGGUA 5'	-47.70	3	KARR-seq
chrX:139865747:139865808:[+]	chr17:35307512:35307551:[+]	nonBSJ supported	CDS	circRNA 5':AUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUU 3' \|\|\|\|\| :\|\|\|\| \|\|\|\| ::\|\| :\|\| \| \|\| \|\|\|\|\| \|\| target 3':GGGAAG--UAGUUUGG-ACAG-----------------UUAGUGGGACCGUC-GUCACCGA 5'	-20.00	3	KARR-seq
chrX:139865827:139865888:[+]	chr17:35310392:35310445:[+]	nonBSJ supported	CDS	circRNA 5':CUUCCA-GUCAGUCAG--UGUCUUCCAGAAAAAUCUACGUCUUCCACCAAA--UCC--AGGUCUUCCAG 3' \|\|\|\|\| \|:\|\| \|\| :\|\|\|\|\|\|\| \|\|:\|\|\| \|\| \|\|\| \|\|\|\|\| \|\|\|\| target 3': AAGGUACGGUGAGAGAAGCAGAAGG-------------AGGAGGA-GUGACGAGGGUUCCAGUAGGUA 5'	-45.10	1	KARR-seq