Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866339:139866374:[+] chr17:34173919:34173956:[+] nonBSJ supported CDS

circRNA 5':CCAGGAAAUCCGU---GUCUUCCA-GCAAAUCCACGUCUU 3'


            ||| ||| || ||| || ||| |||


target  3':UGUCAG-UAGUCAUACCAGCCAACGCGACUAGUAA-AGAC 5'

 -11.40 2 KARR-seq
chrX:139866297:139866337:[+] chr17:34173913:34173954:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCCUCAAAUCCAUA--GCUUCCGAAAAAUCCAGGUCU 3'


            ||| || ||| :|||


target  3':UCAGUAGUCAUACCAGCCAACGCGACUAGUAAAGACA-UCAGC 5'

 -7.60 2 KARR-seq
chrX:139866627:139866648:[+] chr17:34171102:34171125:[+] nonBSJ supported CDS

circRNA 5':CCAGCAUCUCC----AGGGCUUCCAG 3'


            || | ||||| |::||:||||


target  3': GUGG-AGAGGGAACUUUCGGAGGUG 5'

 -21.50 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866297:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC