Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866576:139866629:[+] chr17:4575388:4575443:[-] nonBSJ supported CDS

circRNA 5':ACUAAGCUAC--GUCUUCCAACAAAUCCAUG---UCUUCCUAUAUCUCCAGGUCUUCCA 3'


            |:||:|| |||||||| |||| ||||||| :|||| :||:|||


target  3':CGGUUUGAGGUCCAGAAGGUGGAGAAGGUCAAGAAGAAGGA---GGAGGAGUAGGAGGA 5'

 -50.00 2 KARR-seq
chrX:139866549:139866593:[+] chr17:4575407:4575443:[-] nonBSJ supported CDS

circRNA 5': CGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUCUUCCA 3'


            | |||||||| |||||| || || |:||:|||


target  3':UGGAGAAGGUCAAGA------AGAAGGAGGAG--GA-GUAGGAGGA 5'

 -33.70 4 KARR-seq
chrX:139866547:139866628:[+] chr17:4575405:4575474:[-] nonBSJ supported CDS

circRNA 5': CACGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCC 3'


            ||| |||||||| |||||| || || |:||:||| || ||||||| || ||| |||||


target  3':GGUGGAGAAGGUCAAGA------AGAAGGAGGAG--GA-GUAGGAGGAGA---AGAAGAAGAAGGAGAUUGAGUGGAAGAAG 5'

 -55.20 1 KARR-seq
chrX:139866545:139866628:[+] chr17:4575403:4575474:[-] nonBSJ supported CDS

circRNA 5': UCCACGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCC 3'


            ||||| |||||||| |||||| || || |:||:||| || ||||||| || ||| |||||


target  3':AAGGUGGAGAAGGUCAAGA------AGAAGGAGGAG--GA-GUAGGAGGAGA---AGAAGAAGAAGGAGAUUGAGUGGAAGAAG 5'

 -59.90 1 KARR-seq
chrX:139865342:139865389:[+] chr17:4575580:4575625:[-] nonBSJ supported CDS

circRNA 5':UUUCCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCC 3'


            |||| : | || || |||||| |||| |||||


target  3': AAGGA-GAAGAAGAAGAAGGAGAAGAAGGAGAAGGAGGAGGAGAAGU 5'

 -27.40 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866545:139866628:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866547:139866628:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866549:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866576:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC