Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866128:139866188:[+]	chr15:40354587:40354643:[+]	nonBSJ supported	Intron	circRNA 5':GCCUCCAGGUCUUCCAG-ACUA-UCCAUGUC-UUCC-AGAAAAUCCUUGUCUUCCCUUAAAUCUA 3' \|\|\|\| \|\|: \|\|\| \|\|\| \|\|\|\|\|\|: \|\|\|\| \|\|\| \|\|\|\|: \|\|\| target 3':AGGAG----AGGUGGUGGUGAGGAGGUACGAAAAGGAUCU----GGAAUUGUAAUUAAGUAAGAA 5'	-32.30	3	KARR-seq
chrX:139866137:139866196:[+]	chr15:40354588:40354643:[+]	nonBSJ supported	Intron	circRNA 5':UCUUCCAGACUAUCCAUGUCUUCCAGAAAA-UCCUUGUCUUCCCUUAAAUCUAUAGC-UUCC 3' \|\|:\|\| \|\|:\| \|\|\|: \|\|:\|\|\|\| \|\|\|\| \|\|\|\|\|\| \| \|\|\| target 3':AGGAGAGGUGGU-GGUG-AGGAGGUACGAAAAGGAUCU----GGAAUUGUAAUUAAGUAAGA 5'	-29.60	3	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr15:40354587:40354643:[+]	target	-	chr15:40354615-40354616	A>G	LAML-KR	ICGC
chr15:40354588:40354643:[+]	target	-	chr15:40354615-40354616	A>G	LAML-KR	ICGC