Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865762:139865791:[+] chr14:102549392:102549422:[-] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGG-UCUUC 3'


            ||||||| || ||| |||:


target  3':AUACAGAAAGUACUAAAACGUCUCCAAGAGU 5'

 -14.20 1 KARR-seq
chrX:139866759:139866803:[+] chr14:102551278:102551328:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAACGUCUCCAGUGU-------GCUGAUCUUCUGACAUUCAGG-UCU 3'


            ||||||| ||| |||: | ||| ||||| ||| | ||:


target  3':ACAGAAGGAAA-AGAAGUCGGAGUAGUAGCGAAU-GAAGAAAU--AGUGCAAGGA 5'

 -30.30 3 KARR-seq
chrX:139865745:139865794:[+] chr14:102551032:102551082:[-] nonBSJ supported CDS

circRNA 5':AGAUCUU-CCAGUCAA---UCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUC-CAG 3'


            |||||| ||||||| |||: |||| |||| ||| | ||:| ||


target  3': CUAGAAGGGUCAGUAACCAGUUCGAGAAUAUCUUAAG--AGG-CAUGAGGAGUA 5'

 -33.40 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866759:139866803:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC