Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866598:139866650:[+] chr13:42158401:42158451:[-] nonBSJ supported Intron

circRNA 5':AUCCAUGUCUUCCUAUAUCUCCA---GGUCUUCCAGCAUCUCCAGGGCU--UCCAGCA 3'


            || ||| || ||||||| :||||||||:| ||| |||| |


target  3':GAGAUAC-GAUG---AUAGAGGAUGAUCAGAAGGUUGAAAC---CCCUUUUAGGUGGA 5'

 -36.90 2 KARR-seq
chrX:139866266:139866324:[+] chr13:42441438:42441516:[-] nonBSJ supported Intron

circRNA 5':UCCAGACUA---------UCCAUGUCUUCCAGAAAAUCC--------------UUGUCUUCCCUCAAAUCCAUAGCUUCCGA 3'


            |||| |||||:|| :|||| | ||| |:|||| |||| |||| |:|| |:


target  3':GGGUCAUAAUGAAAGAAGAGGUAUAG-GGGUCAGUAAGGUUACGUCAGAAUUGAGCAGAC-GGAGA-UAGGAUUUGAUAGUC 5'

 -39.40 1 KARR-seq
chrX:139866264:139866324:[+] chr13:42441436:42441516:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGACUA---------UCCAUGUCUUCCAGAAAAUCC--------------UUGUCUUCCCUCAAAUCCAUAGCUUCCGA 3'


            |:|||| |||||:|| :|||| | ||| |:|||| |||| |||| |:|| |:


target  3':UAGGGUCAUAAUGAAAGAAGAGGUAUAG-GGGUCAGUAAGGUUACGUCAGAAUUGAGCAGAC-GGAGA-UAGGAUUUGAUAGUC 5'

 -41.00 1 KARR-seq
chrX:139866262:139866324:[+] chr13:42441450:42441516:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCC--------------UUGUCUUCCCUCAAAUCCAUAGCUUCCGA 3'


            ||||| |||||:|| :|||| | ||| |:|||| |||| |||| |:|| |:


target  3':AAGAAG-------AGGUAUAG-GGGUCAGUAAGGUUACGUCAGAAUUGAGCAGAC-GGAGA-UAGGAUUUGAUAGUC 5'

 -39.20 1 KARR-seq
chrX:139866262:139866314:[+] chr13:42441433:42441506:[-] nonBSJ supported Intron

circRNA 5': GUCUUCCAGACUA---------UCCAUGUCUUCCAGAAAAUCC--------------UUGUCUUCCCUCAAAUCCA 3'


            | |:|||| |||||:|| :|||| | ||| |:|||| |||| ||||


target  3':ACUUAGGGUCAUAAUGAAAGAAGAGGUAUAG-GGGUCAGUAAGGUUACGUCAGAAUUGAGCAGAC-GGAGA-UAGGA 5'

 -38.60 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866262:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866264:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866266:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC