Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866759:139866817:[+]	chr12:53666294:53666347:[+]	nonBSJ supported	Intron	circRNA 5':GUCUUCCAACGUCUCCAGUGUGCUGA---UCUUCUGA-CAUUCAGGUCUUCCAGUGUCUGCAA 3' \|\|\|\|\|\| \|:\|:\| \|:\|: \|\|: :\|\|\|\| \|\|:\|\|\|\| :\| :\|\|\|\|\|\| target 3':GGGAAGGA--CGGGGUUUAUCCGGGUACGGGAAGUGUGGUGAGUCGGG-------UAGACGUG 5'	-42.60	2	KARR-seq
chrX:139866753:139866817:[+]	chr12:53666294:53666350:[+]	nonBSJ supported	Intron	circRNA 5':AUCCAUGUCUUCCAACGUCUCCAGUGUGCUGA---UCUUCUGA-CAUUCAGGUCUUCCAGUGUCUGCAA 3' \|\|\| :\|\|\|\|\| \|:\|:\| \|:\|: \|\|: :\|\|\|\| \|\|:\|\|\|\| :\| :\|\|\|\|\|\| target 3':GAGG---GGAAGGA--CGGGGUUUAUCCGGGUACGGGAAGUGUGGUGAGUCGGG-------UAGACGUG 5'	-44.60	2	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866753:139866817:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC
chrX:139866759:139866817:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC