5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866130:139866180:[+] | chr11:65267983:65268052:[+] | nonBSJ supported | Exon |
circRNA 5': CUCCAGG--UCUUCC-AGACUAUCCAUGUCUUCCAGAAAA--------------------UCCUUGUCUUC-CCU 3' |||| |||||| || || ||| || |||:| ||| |:||||| || target 3':CGAGGAAGGAAGAAGGAUC-GA-AGGA--AGU-GGUUUAGCGUGACCGAGGACCUGAGAAAAGG-AUAGAAGUGGU 5' |
-32.20 | 3 | KARR-seq |
| chrX:139865892:139865930:[+] | chr11:65267129:65267188:[+] | nonBSJ supported | Exon |
circRNA 5':AUCCACAUCUUC-CGGAAAAAA---------UCCAG-------GUCUUCCAG----CCAA 3' ||| |||||| | ||| ||||||||| ||| target 3':AAGGGAUAGAAGAGAUAAGAAAAGAAGCGGAAGGGCAUGAAGACAGAAGGUCAAAAGGUG 5' |
-24.40 | 3 | KARR-seq |
| chrX:139866526:139866552:[+] | chr11:65268258:65268288:[+] | nonBSJ supported | Exon |
circRNA 5':AGCCAUGUC----UUCCAGAAAAUCCACGUC 3' |||||: |||||||||| | ||:| target 3':AUGGUAUUCAUUCAAGGUCUUUUUGUUGUAU 5' |
-19.80 | 4 | KARR-seq |
| chrX:139866260:139866324:[+] | chr11:65267137:65267200:[+] | nonBSJ supported | Exon |
circRNA 5':AUGUCUUCCAGACUAUCCAUGUCUUC-CAGAAAA--UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGA 3' |:||||| ||| |:||||| | || |:|:|||||| || |||||: target 3':AAUAGAAGAUUAA--AGGGAUAGAAGAGAUAAGAAAAGAAGCGGAAGGGCAUGAAGACA--GAAGGUC 5' |
-38.20 | 3 | KARR-seq |
| chrX:139866761:139866826:[+] | chr11:65270280:65270339:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCC--AACGUCUCCAGUGU-GCUGAUCUUCUGACAUUCAGGU-CUUCCAGUGUCU--GCAAUAUCCAGGU 3' |||| ||| || ||| |||| | ||| |:| || |||| |||:| target 3':UAAGGCAUUGAAAUUUAACCAUCGA------------AAGUAAACGAAUUUUAAAAAACCG-UAUACGUCUAU 5' |
-13.30 | 5 | KARR-seq |
| chrX:139866300:139866309:[+] | chr11:65268313:65268322:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCCCUCAA 3' |||||:|| target 3':UGAGGGGGUA 5' |
-11.80 | 4 | KARR-seq |
| chrX:139866508:139866557:[+] | chr11:65268028:65268080:[+] | nonBSJ supported | Exon |
circRNA 5':AUCCACGUCUUC-CAACCA-------AGCCAUGUCUUCCAGAAAAUCCACGUCUUCCA 3' ||| | |||| | |||| ||| :||||| ||| | ||||| target 3':AAGGAUC-GAAGUGGUGGUUUAGCAAUCGCGA-GGAAGGAAGA--AGGAUC-GAAGGA 5' |
-28.80 | 4 | KARR-seq |
| chrX:139866191:139866217:[+] | chr11:65267136:65267160:[+] | nonBSJ supported | Exon |
circRNA 5':GCUUCCAAAAAAUCCGGGUCUUCCAGG 3' ||||| || ||||||||| target 3':GGAAGGGCAUGAAGA--CAGAAGGUCA 5' |
-22.60 | 1 | KARR-seq |
| chrX:139866273:139866291:[+] | chr11:65267208:65267226:[+] | nonBSJ supported | Exon |
circRNA 5':UAUCCAUG-UCUUCCAGAAA 3' ||| ||||| |:|| target 3': UAGAAAAAAGAAGAUUUUC 5' |
-6.10 | 3 | KARR-seq |
| chrX:139866490:139866556:[+] | chr11:65267986:65268056:[+] | nonBSJ supported | Exon |
circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCA--ACCAAG-C-CAUGUCUUCCA-GAAAA---UCCACGUCUUCC 3' ||: | :||||| ||| | ||||| |||||: | ||: :||| || ||| :||||| target 3':AUCGCGAGGAAGGAAGA--AGGAUC-GAAGGAAGUGGUUUAGCGUGACCGAGGACCUGAGAAAAGGA-UAGAAGU 5' |
-38.20 | 4 | KARR-seq |
| chrX:139866364:139866395:[+] | chr11:65267154:65267188:[+] | nonBSJ supported | Exon |
circRNA 5':AUCCACGUCUUC-CAACAAAGCCA--UGUCUUCCA 3' ||| :||||| | :|:||||| target 3':AAGGGAUAGAAGAGAUAAGAAAAGAAGCGGAAGGG 5' |
-19.80 | 3 | KARR-seq |
| chrX:139866389:139866466:[+] | chr11:65267111:65267167:[+] | nonBSJ supported | Exon |
circRNA 5': UCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAA--CAAAGGUACGUCUUCC 3' ||||| |:||||| ||||| ||||||||| || ||||| |||| :||||| target 3':AAGAAG------------CGGAAGGGC--AUGAAGACAGAAGGU----------CAAAAGGUGAAGUUUGAAGAUAGAAGA 5' |
-45.00 | 4 | KARR-seq |
| chrX:139866389:139866472:[+] | chr11:65267107:65267167:[+] | nonBSJ supported | Exon |
circRNA 5': UCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAA--CAAAGGUACGUCUUCCAACAAA 3' ||||| |:||||| ||||| ||||||||| || ||||| |||| :||||| ||| target 3':AAGAAG------------CGGAAGGGC--AUGAAGACAGAAGGU----------CAAAAGGUGAAGUUUGAAGAUAGAAGAG-GUU 5' |
-45.90 | 1 | KARR-seq |
| chrX:139866094:139866165:[+] | chr11:65267979:65268038:[+] | nonBSJ supported | Exon |
circRNA 5':GCCAUGUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGACUAUCCAUGUCUU--CCA-GAAA 3' || | ||||| ||| ||| || ||| |||| || ||: ||| |:|||| ||| ||| target 3': GGAUC-GAAGGAAGU---GGUUUAGC--GUGACC-GAGGACCUGAGAAA-----AGG-AUAGAAGUGGUGCUU 5' |
-35.80 | 3 | KARR-seq |
| chrX:139866498:139866527:[+] | chr11:65267107:65267144:[+] | nonBSJ supported | Exon |
circRNA 5': CUUCCAGAAAAUCCAC-----------GUCUUCCAACCAAG 3' ||||||| ||||| :||||| |||| target 3':AGAAGGUCAAA-AGGUGAAGUUUGAAGAUAGAAGA--GGUU 5' |
-24.50 | 2 | KARR-seq |
| chrX:139866369:139866418:[+] | chr11:65267157:65267199:[+] | nonBSJ supported | Exon |
circRNA 5':CGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUA 3' |||||| || |:||||| || ||| ||||| |||| target 3':AUAGAAGAUUAAAG-GG-AUAGAAG--AGA-UAAGAAAAGAAG--CGGAA 5' |
-25.00 | 3 | KARR-seq |
| chrX:139866295:139866346:[+] | chr11:65267978:65268038:[+] | nonBSJ supported | Exon |
circRNA 5':CUUGUCUUCC--C-UCAAAUC-CAUA-GCUUCC-GAAAAA--UCCAGGUCUU--CCAGGAAA 3' |:|: ||||| | :|||||| ||: |||:| || ||| :|||| ||| ||| target 3':GGAUCGAAGGAAGUGGUUUAGCGUGACCGAGGACCUGAGAAAAGGA-UAGAAGUGGUGCUUG 5' |
-33.30 | 1 | KARR-seq |
| chrX:139866256:139866303:[+] | chr11:65267388:65267452:[+] | nonBSJ supported | Exon |
circRNA 5':AGCCAUGUCUUCCAGA------------------CUAUCCA-UGU-CUUCCAGAAAAUCCUUGUCUUC 3' || || ||||: ||||| |:| |||| ||| |||||||| target 3':ACGAUAAAAUAGGUUAAAAACCGAAAUAUAAAAAGAUAGAAGAUAUGAAGAGG--UUAUGAACAGAA 5' |
-21.00 | 2 | KARR-seq |
| chrX:139865709:139865735:[+] | chr11:65271247:65271273:[+] | nonBSJ supported | Exon |
circRNA 5':AGUCUUCCAGUAAAUCUAGUUCUUCCA 3' |:||| ||| |||||||| target 3':ACGGAAUUUCAAUGUAAGCAAGAAGGC 5' |
-19.30 | 3 | KARR-seq |
| chrX:139865963:139866011:[+] | chr11:65267081:65267126:[+] | nonBSJ supported | Exon |
circRNA 5':AAAAUCCAUGUCU--UCCAGAAAAUCCAUGUCUU-CCAGUAACCUCCCAGUC 3' |||: |:||| ||||:| :||:| ||| ||||||:| target 3':GUUUGAAGAUAGAAGAGGUUUAACAAAG-UAGGAUGGU-----GAGGGUUAA 5' |
-26.60 | 2 | KARR-seq |
| chrX:139866098:139866117:[+] | chr11:65267128:65267147:[+] | nonBSJ supported | Exon |
circRNA 5': UGUCUUCCAGAAAAUCCACA 3' |||||||||| ||||| target 3':GACAGAAGGUCAAA-AGGUGA 5' |
-23.90 | 1 | KARR-seq |
| chrX:139866686:139866719:[+] | chr11:65267154:65267179:[+] | nonBSJ supported | Exon |
circRNA 5':AUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCA 3' |||||:| |||| ||||| |:||||| target 3':AAGAGAUA-AGAAA-----AGAAG--CGGAAGGG 5' |
-22.70 | 2 | KARR-seq |
| chrX:139866295:139866346:[+] | chr11:65267978:65268039:[+] | nonBSJ supported | Exon |
circRNA 5': CUUGUCUUCC--C-UCAAAUC-CAUA-GCUUCC-GAAAAA--UCCAGGUCUU--CCAGGAAA 3' |:|: ||||| | :|||||| ||: |||:| || ||| :|||| ||| ||| target 3':AGGAUCGAAGGAAGUGGUUUAGCGUGACCGAGGACCUGAGAAAAGGA-UAGAAGUGGUGCUUG 5' |
-34.40 | 1 | KARR-seq |
| chrX:139866044:139866069:[+] | chr11:65267694:65267711:[+] | nonBSJ supported | Exon |
circRNA 5':AGUCUUCCGGAUAAUUUGGGUCUUCC 3' |:|||||::|| ||||| target 3':CCGGAAGGUUUA--------AGAAGA 5' |
-17.00 | 2 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139865892:139865930:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |
| chrX:139866260:139866324:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866295:139866346:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |
| chrX:139866761:139866826:[+] | circRNA | - | chrX:139866793-139866794 | C>T | LICA-CN | ICGC |